napari_track_edit.motile.menus.run_editor
Attributes
Classes
Module Contents
- napari_track_edit.motile.menus.run_editor.logger
- class napari_track_edit.motile.menus.run_editor.RunEditor(viewer: napari.Viewer)
Bases:
qtpy.QtWidgets.QGroupBox- start_run
- viewer
- solver_params_widget
- run_name: qtpy.QtWidgets.QLineEdit
- layer_selection_box: qtpy.QtWidgets.QComboBox
- update_labels_layers() → None
Update the layer selection box with the input layers in the viewer
- update_layer_selection() → None
Update the rest of the UI when the selected layer is updated
- _update_max_frames() → None
Update the max frame constraint from viewer dims.
- _labels_layer_widget() → qtpy.QtWidgets.QWidget
Create the widget to select the input layer. Uses magicgui, but explicitly connects to the viewer layers events to keep it synced.
- Returns:
- A dropdown select with all the labels layers in layers
and a refresh button to sync with napari.
- Return type:
QWidget
- get_input_layer() → napari.layers.Layer | None
Get the input segmentation or points in current selection in the layer dropdown.
- Returns:
- The points or labels layer with the name
that is selected, or None if no layer is selected.
- Return type:
napari.layers.Layer | None
- _run_widget() → qtpy.QtWidgets.QWidget
Construct a widget where you set the run name and start solving. Initializes self.run_name and connects the generate tracks button to emit the new_run signal.
- Returns:
- A row widget with a line edit for run name and a button
to create a new run and start solving.
- Return type:
QWidget
- get_run() → napari_track_edit.motile.backend.MotileRun | None
Construct a motile run from the current state of the run editor widget.
- Returns:
- A run with name, parameters, and input segmentation.
Output segmentation and tracks not yet specified.
- Return type:
- _convert_da_to_np_array(dask_array: dask.array.core.Array) → numpy.ndarray
Convert from dask array to in-memory array.
- Parameters:
dask_array (da.core.Array) – a dask array
- Returns:
data as an in-memory numpy array
- Return type:
np.ndarray
- emit_run() → None
Construct a run and start solving by emitting the start run signal for the main widget to connect to. If run is invalid, will not emit the signal.
- new_run(run: napari_track_edit.motile.backend.MotileRun) → None
Configure the run editor to copy the name and params of the given run. A run loaded from a directory with no params file has no solver_params — leave the editor at its current values rather than emitting None.