Napari Track Edit

Napari Track Edit is a napari plugin for interactive visualization, navigation, and editing of object tracking results. You can open and edit existing tracking data, manually create new tracking results, or run automatic tracking with motile. Motile is a library that makes it easy to solve tracking problems using optimization by framing the task as an Integer Linear Program (ILP). See the motile documentation for more details on the concepts and method.

User guide

• Getting started
  • Installation
  • Plugin layout
  • Example data
  • Example tracks
  • Tutorial
• Viewing and navigating tracks
  • Track visualization
  • Selecting nodes
  • Lineage View
  • Table view
  • Viewing all nodes vs. selected lineages
  • Visualization options
• Generating new tracks
  • Tracking with Motile
  • Tutorial video
  • Tracking from scratch
  • The Tracks List
• Measuring and displaying features
  • Measuring features
  • Displaying features in the Lineage View
  • Displaying features in the Table
• Groups
  • Creating groups
  • Adding and removing nodes
  • Using groups
• Editing tracks
  • Editing nodes
  • Editing edges
  • Undoing and redoing actions
  • Copying nodes from an external source
• Saving, loading, importing and exporting
  • Saving and loading vs. importing and exporting
  • Saving tracks
  • Loading tracks
  • Exporting tracks
  • Importing externally generated tracks
  • Working in a database
• Key bindings and mouse functions
  • Selection
  • Editing
  • View
  • Lineage view
• Tutorial
  • Preparations
  • Inspecting a tracking result
  • Generating Tracks
  • Displaying object features in the Lineage View
  • Creating groups
  • Editing Tracks
  • Mouse and keyboard bindings

Reference

• API reference